Sentence examples for and the alignment at from inspiring English sources

A summary of the four categories and the representative methods tested in this study is shown in Table  1.> -wrap-foot> *Bowtie2 may be considered a hybrid BWT-Seed Method, as multiple substrings are taken from each read for the BWT lookup of candidate mapping loci, and the alignment at each candidate loci is extended.

Primer sequences were deleted and the initial alignment was further modified with GBLOCKS [ 75] to remove ambiguously aligned internal positions and to trim the alignment at the 5' and 3' ends.

The catalytic domains were aligned using Clustal X [38] and the alignments at the catalytic centre of the catalytic domain was used to derive the search motifs [12].

Given one state transition from u to v at position i, where u and v are two alignment states, the edge feature function is defined as follows: (3) where the function f is the feature generation function, generating input features from the target and template proteins for the alignment at position i.

There is occurrence of Inorganic Silt (MH and ML) and OH in four locations along the alignment, at chainages 26.85 km, 27.25 km, 34.75 km, and 35 km.

It works as follows [ 9, 6]: for a fixed alignment of sequences, a collection of new alignments is generated by deleting some columns from the alignment at random and replacing them by other columns from that alignment, also picked at random.

To determine if the uncategorized sequence was single-copy or repetitive, WGS reads were aligned to the BACs and the alignment depth at each position was observed.

If the subject is over 40% identical to the query and the alignment covers at least 80% of the subject, then the subject is clustered with the query, and any homology relations involving the subject will be ignored.

Sequences were annotated to the reference protein when the bests hits to NCBI represented sequences of interest and the alignment showed at least 30% amino acid identity to the reference protein.

Sequences were aligned by WebPrank[ 44], and the alignment was trimmed at each end.

Gene families were defined as groups of genes for which the alignments yielded ≥ 90% identity and the alignment length was at least 50% of both the query and matched sequences.