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These were aligned using ClustalW and the alignment of repeat regions was examined manually.
The sequences were aligned with clustalw and the alignment was manually adjusted.
Sequences were aligned using Clustal X, and the alignment manually edited using the ED program of the MUST package [53].
These sequences were aligned using Lasergene 8.0 and the alignment results were shown in Figure 3.
Sequences were aligned with ClustalW, 33 and the alignment manually edited using GeneDoc (http://www.nrbsc.org/gfx/genedoc/).
Sequences were aligned using MUSCLE (Edgar 2004) and the alignment was imported into ARB (Ludwig et al. 2004).
Sequences were aligned with MUSCLE 3.7 software and the alignment was refined by Gblocks 0.91b software.
Sequences were aligned by WebPrank[ 44], and the alignment was trimmed at each end.
Second, aligning divergent sequences is difficult, and the alignment itself can create a strong phylogenetic bias.
(102) The images are usually aligned starting from low tilt angles, and the alignment progressively includes higher tilts.
However, the circumstances and the alignment of forces were different enough to give pause for reflection.
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