All contigs retained after filtering for base coverage (10,076 and 680 retained from the two reference-guided assemblies and 57,035 retained from de novo assembly) were BLASTed against the NCBI non-redundant (nr) protein database using Blast2GO [ 24, 25].
Nevertheless, our gene expression noise analyses revealed that genes with a high expression breadth and genes retained from the α WGD were less noisy than other genes (supplementary table S4).
There is experience too, with Tim Bresnan earning his first England limited overs call since the 2014 World Twenty20, and Steven Finn retained from the World Cup squad despite being dropped four games into that doomed tournament after going at nearly seven runs an over.
Pairings between 'Avenida Niemeyer' and 'São Conrado' and between 'Ken's White' and JFS4512 are retained from the AFLP tree, and clade #1 is nearly equivalent to Dice/UPGMA cluster A2.
In addition to gbM, gene length, expression level, expression breadth and gene duplicates retained from the α WGD were kept in our best model and all had a significantly positive effect on expression consistency (Table 2 and supplementary table S7).
Indeed, the best model (selected by BIC model selection) included only gene length, expression breadth and gene duplicates retained from the α WGD as well as expression level, gene length, expression breadth and gene duplicates retained from the α WGD as explanatory variables for F* and Fʹ, respectively (supplementary table S2 and S3).
Rather, gene length, expression breadth and gene duplicates retained from the α WGD seem to indirectly link gbM to gene expression noise through the strong correlation of gbM with these genomic features.
The mechanisms by which ECM hydrogels direct cell behavior and influence remodeling outcomes are only partially understood, but likely include structural and biological signals retained from the native source tissue.
True, Pulitzer would be more of a threat if his dialogue weren't so formulaic, and the narrative reversals retained from the film are hardly surprising, and that's probably for the best.
Perceptions are reduced to myths and caricatures and to the limited education retained from the American classroom.
