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The trees were visualized and manipulated using the program TreeExplorer v2.12 (Tamura et al. 2007).
Protein structures were visualized and manipulated using the Swiss-PDB and PyMol programs http://pymol.sourceforge.net/.net/
Sequence data were organized and manipulated using the BioPerl toolkit [ 66].
Chromatographic data were collected and manipulated using the Chromeleon® Chromatography Management System version 6.8 (Dionex Corporation).
Chromatographic data were collected and manipulated using the Chromeleon® Chromatography Management System version 6.8.
Alignments were built using the MUSCLE program [ 38] and manipulated using the JALVIEW program [ 39].
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To address this problem, we present GraFIX, a novel semiautomatic method consisting of a two-step process in which eye-tracking data is initially parsed by using velocity-based algorithms whose input parameters are adapted by the user and then manipulated using the graphical interface, allowing accurate and rapid adjustments of the algorithms' outcome.
Sequences and trees were manipulated using the R packages 'ape' [ 52], 'seqinr' [ 53], 'pegas' [ 54] and custom scripts.
Art works can also be manipulated using the touchscreen and changed through an intuitive set of controls called the "Simplicity Coding Page".
Structures were manipulated using the Swiss-PDB viewer and were rendered using Yasara View program (36).
The images can be moved and manipulated using multitouch on a tablet.
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