Sentence examples for and lists were analyzed from inspiring English sources

Functional classification of the differentially expressed genes was done on the FatiGO web-tool (http://fatigo.bioinfo.cipf.es/) [42] and lists were analyzed using Genevestigator V3 (https://www.genevestigator.ethz.ch/)[43].

Pairwise comparison of truncation mutants to wild type cells was performed by volcano plot analysis to streamline gene profiles to transcripts changing by more than 2-fold when compared to WT, and these lists were analyzed by Ingenuity to extract significant functional annotations and gene ontology enrichments.

The gene lists were analyzed and clustered in different pathways or functional categories sorted by a p-value<0.05, according to their biological function using the Database for Annotation, Visualization and Integrated Discovery 2.0 (DAVID 2.0) tool [17].

MS/MS mass peak lists were analyzed for b and y ions using SEQUEST (version 3.3.1, Thermo Finnigan, San Jose, CA) software.

For enrichment analysis of biological process ontology, probe lists were analyzed in DAVID and processes were selected if P-values were smaller than 0.05.

The resulting gene lists were analyzed for their function and relation using the DAVID functional annotation tool [ 22], KEGG pathway and the NCBI Gene database.

The Gene Ontology (GO) terms and KEGG annotations of genes included in the different lists were analyzed by using DAVID tools.

For pathway analysis, the complete gene lists were analyzed with the Bibliosphere software (Genomatix) and mapped to Gene Ontology (GO) trees.

One hundred ingredient lists were analyzed to find this out.

Several stop-word lists were analyzed for their ability to improve system performance, viz.

The simplified peak lists were analyzed by PMF using search algorithms, such as Mascot or MS-Fit.