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94 Indeed, some terms/categories that were missing in the standard GO and inferred by a network approach were submitted to the GO Consortium and incorporated into the ontology.
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The evidence code distribution for the BLAST hit chart indicates an over-representation of Inferred Electronic Annotation (IEA), followed by Inferred by Mutant Phenotype (IMP) and Inferred by Direct Assays (IDAs) (Additional file 5: Figure S5A).
Starting from several sets containing real and synthetic chemical structures represented by graphs, we study the relatedness between a classical (partition-based) complexity measure called the topological information content of a graph and some others inferred by a different paradigm leading to partition-independent measures.
The GAP4 assemblies were manually inspected at the polymorphic positions and haplotypes were inferred by a proprietary script.
The RegPrecise database contains detailed information on regulatory interactions and transcriptional regulons inferred by a comparative genomics in diverse bacterial genomes [ 21].
Specifically, we thresholded the subject-specific SPMs at P < 0.05 and chose the local maximum within 8 mm of the group activation maxima in primary auditory cortex (A1) and primary visual cortex (V1) as inferred by a probabilistic cytoarchitectonic atlas in MNI space (Eickhoff et al. 2005).
Metastability of the solution was inferred by a stable pH for at least 30 minutes.
Demographic histories were inferred by a pairwise mismatch distribution analysis [40] (Figure 3).
Positive selection was inferred by a contrast of hypotheses using a maximum likelihood approach.
Overall genetic structure inferred by a nonhierarchical amova resulted in a significant ΦST value = 0.19109.
The evolutionary history was inferred by a Maximum Likelihood phylogeny (Additional file 1: Figure S1).
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