Exact(1)
No internal patterns emerged and we extended the alignments both upstream and downstream using the IAP reference sequence as a proxy for the original IAP transcripts.
Similar(59)
The 14-bp consensus was subsequently researched in all ARS sequences extended 200 bp upstream and downstream, using MAST [ 69].
The contig is identified, assembled between the upstream and downstream probes using the method described below, and the transcript derived sequence is used to replace the error flag.
Complementation of the sasF, arcA, vraE and SAR2632 mutants was performed by amplifying each gene with sufficient upstream and downstream DNA using the primer pairs listed in Table 14.
We estimated the ages of the duplication events of human GPCRs and "downstream genes" using the "nearest neighbor clock" approach we introduced in a previous work [ 2].
Upstream and downstream uses can also be incompatible.
In the optical line terminal (OLT), we use two cascaded Mach Zehnder modulators (MZMs) on each wavelength channel to generate an optical carrier, and produce the wireless and the downstream traffic using the orthogonal modulation technique.
Inhibition of both Rac1 and Cdc42 downstream signalling using the CRIB of Pak reduced the number and extent of EspT-induced lamellipodia to a level comparable with the Rac1 dominant negative (Fig. 4B).
To refine the association signal at the BIN1 locus, we combined association test results from all studies (Pfizer, ADNI, GenADA, Harold US, Harold Germany, Harold UK, and QFP) across the 500 Kb regions upstream and downstream of BIN1 using the meta-analysis function in PLINK assuming a fixed effect model.
Particularly, we created a histogram by counting the number of AGO2 binding sites located within 600 kb upstream and downstream of L1 using the 25-kb interval size (Fig. 6C and 6D). Figure 6C and Figure 6D demonstrate the frequency distribution of AGO2 binding sites with respect to antisense L1 and sense L1, respectively.
Alignments of genomic Dlx sequences from C. teleta, P. lamarckii, P. dumerilii and H. robusta (padded by an additional 5000 bp both up and downstream) were performed using the program CHAOS with DIALIGN [ 91].
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