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Analyses and data processing were performed using SAS® software (SAS Institute, Cary, NC, USA).
Image and data processing were performed using Image/J (NIH, USA) and Microcal Origin (Microcal Software Inc., Northampton, MA, USA).
Control and data processing were performed using WinCadence v4.4 software (Physical Electronics, Eden Prairie, MN).
Quantile normalization and data processing were performed using the GeneSpringGXv11.5.1 software package (Agilent).
Statistical analysis and data processing were performed using SPSS software – version 20 for Windows™.
Signal detection and data processing were performed using Quantasoft Software v.1.3.2 (Bio-Rad).> -wrap-foot> All raw marker-gene sequencing data are publicly deposited in QIITA (http://qiita.colorado.edu/) under the accession number 10105 (http://qiita.colorado.edu/study/description/10105).edu/study/description/10105
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Quantile normalisation and subsequent data processing were performed using the GeneSpring GX v11.5.1 software package (Agilent Technologies).
Quantile normalization and subsequent data processing were performed using the GeneSpring GX v12.0 software package.
All crystallographic calculations after diffraction data processing were performed using Phenix (Adams et al., 2010).
Data processing was performed using FlowJo and WinMDI software.
All data processing was performed using in-house Perl scripts and Microsoft Excel 2002.
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