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The Z-scores described here are based upon a published database, and computed using the same software code that exists in the analysis software, when used in "dynamic JTFA" mode.
The closure list "ListClose", which is denoted S x and computed using the following formula: (mathcal {H} circ mathcal {F}(x)).
In the main algorithm, we determine for each row The closure list "ListClose", which is denoted S x and computed using the following formula: (mathcal {H} circ mathcal {F}(x)).
A comparative Ct approach was utilized to quantify the relative levels of mRNA [25] and computed using the RQ 1.2 software.
We next examine if these conformational wells exhibit any similarity in terms of their internal energies, defined as the sum of van der Waals and electrostatic energy over all interactions in the protein and computed using the program NAMDEnergy [37].
The signal intensities on autoradiograms were scanned and computed using the Image J software.
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A comparative model of the N-terminal portion of Med16 containing 7 WD motifs (8 538) was discovered and initially computed using the Phyre2 server (Kelley and Sternberg, 2009).
Raw sequencing tags were binned, smoothed, and RPKM computed using the deepTOOLS genomeCoverage tool (20 bp bin, 100 bp sliding window)29.
Stresses based on recorded strains and those computed using the described technique are compared.
Graphs were generated and parameters computed using the GraphPad Prism program (GraphPad Software Inc., San Diego, USA).
These were expressed as percentages and were computed using the STRS command in STATA, version 12 (StataCorp, 2011).
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