Once all of the second round questionnaires have been received and scored, they will be collated using the same methods described for round one.
The resulting microarray data were collated using the Stanford Microarray Database and utilized for pairwise analysis using the Statistical Analysis for Microarrays (SAM) algorithm and the student's two-tailed t-test to identify genes showing significant changes in expression.
Such diagrams from our study, the HNSCC study and all cancer studies from TCGA were collated using the image-editing tool, GIMP (v2.8.0) (www.gimp.org).
In this study, we tested the suitability of the Tsunakawa Shaw paleointensity method for analyzing baked clay samples collected from the floor of the Sayama Higashiyama-Oku kiln by comparing the results with those collated using the IZZI-Thellier method.
Following the identification of the physical positions of each QTL, a comprehensive list of genes mapping to a region ±15 cM from the most likely position of the QTLs was collated using the Ensemble databases.
Data were collated using the Stanford Microarray Database [ 90] in which spots showing obvious abnormalities were excluded from the analysis and an uncentered metric was used during the clustering.
Data were collected and collated using Microsoft Excel Microsoft Corp , Redmond, WA, USA).
Data were extracted and collated using Excel® spreadsheet software (Microsoft Corp ,Redmond, WA).
The Blast hits were collated using Perl scripts and the percentage of bases from each model covered by transcripts calculated.
