The phrase "and assembled using the" is correct and usable in written English.
It can be used when describing the process of putting together components or materials in a specific manner or with particular tools.
Example: "The furniture was designed to be easily disassembled and assembled using the provided instructions."
Alternatives: "and constructed with the" or "and put together using the".
The transcriptome of each of two species of color-polymorphic theridiid spider was sequenced using Illumina technology and assembled using the assembler trinity.
Reads were aligned and assembled using the Newbler assembler software provided with the GS FLX instrument.
Obtained sequencing reads were quality trimmed and assembled using the Newbler assembler software (version 2) by 454 Life Sciences.
Sequence reads were trimmed at a threshold quality value (Phred) of 20 and assembled using the Phrap assembler.
As a result, a set of cleaned ESTs generated from G. hirsutum was clustered and assembled using the CAP3 assembly program.
(2) 454/Roche Titanium shotgun and standard long paired-end reads for each pool were combined and assembled using the 454 Newbler assembler (v2.0.00.10), after screening for E. coli and BAC vector sequence.
The remaining reads were merged and assembled using the previously presented procedure.
The remaining reads were then imported into CLC Genomics Workbench (CLC bio, Aarhus, Denmark), trimmed to remove Nextera-specific transposon sequences as well as short and low quality reads, and assembled using the CLC de novo assembler.
All samples where pooled, both Roche GS-FLX and Illumina sets, and assembled using the de novo transcriptome assembler Trinity version 2011-10-29 (http://trinityrnaseq.sourceforge.net/) [ 14].
The STPD currently gives public access to P. euphratica genome assembly version 1.1, which was sequenced and assembled using the fosmid pooling and hierarchical approach.
Sequence reads were edited and assembled, using the DNASTARsoftware (Lasergene, Madison, WI).
