Sentence examples for and alignment to generate from inspiring English sources

The following parameters were used for this search: "cross_match" as the search model; "slow search" to obtain a search 0-50-5%re sensithan then the standard; "fungi" to specify the species or group of input sequences and "alignment" to generate an output file showing the alignment.

The following parameters were used for this search: "RM_BLAST" as the search model; "slow search" to obtain a search 0-50-5%re sensithan then the standard search; "fungi" to specify the species or group of input sequences; and "alignment" to generate an output file showing the alignment.

8,460 L1 elements with length over 6000 bp were identified and used for alignment to generate LINE nucleotide base matrix.

Full-length Satellite 1 sequences were identified and used for alignment to generate a Satellite 1 nucleotide base matrix.

We then performed an optimal global alignment to generate accurate alignment statistics.

In the Whole paired-end approach, tools align the full-length paired-end reads on a reference and use discordant alignments to generate a set of putative fusion events which are finally selected using several additional pieces of information or filtering steps.

To compare these three alignments, we selected 50 sequences representing the phylogenetic diversity of the intestinal microbial community, extracted the alignments of these 50 sequences from the larger alignments, and then used these alignments to generate phylogenetic trees (using a maximum likelihood method available on the CIPRES web-portal: http://8ball.sdsc.edu 8889/cipres-web .sdsc.edu 8889/cipres-web

After realignment of the trimmed, grouped sequences, custom perl scripts (available upon request) parsed alignments to generate figures and tally substitutions.

Much like with the known families, FastBLAST uses these pairwise alignments to generate multiple sequence alignments.

Use pairwise structure based alignments to generate a template alignment of all PDB sequences.

The software package ClustalX[ 25] was used for alignment and to generate a bootstrapped phylogenetic tree using the neighbour joining method according to Saitou and Nei[ 26].