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To this end, we propose a multi-task fully convolutional neural network (FCN) architecture to address the problem of 3D fetal brain localization, structural segmentation, and alignment to a referential coordinate system.
Using this approach, we compared a model assuming homogenous distribution of selective constraints along the protein and the phylogeny (model M0: one ω value for the entire tree and alignment) to a model assuming an independent ω for each lineage of the tree [ 66].
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Functional annotation of the loci involved searches against the UniRef 100 database, Pfam domain database, Interpro and alignments to a wide range of expression profile datasets including Sanger-derived Expressed Sequence Tags, full-length cDNAs, Massively Parallel Signature Sequences, Digital Gene Expression, and mRNA-seq datasets (http://rice.plantbiology.msu.edu/expression.shtml).shtml
Transcripts derived from de novo assembly and alignments to a reference genome are reported to provide a template for genome annotation that compares well with the utility of FL-cDNAs [ 11].
To overcome these issues, we developed a pipeline that uses object segmentation, background information, normalization and alignment to obtain a better feature set that can be used for effective classification.
The following parameters were used for this search: "cross_match" as the search model; "slow search" to obtain a search 0-50-5%re sensithan then the standard; "fungi" to specify the species or group of input sequences and "alignment" to generate an output file showing the alignment.
Cand4 had a positive HHMMiR prediction and an alignment to a known miRNA family (RF00816).
The raw sequencing reads were aligned to the assembled contigs and preloaded into a file structure that allows the user to quickly locate and display alignment to a contig of interest through JBrowse (v. 1.7.6; [ 69, 70]).
Sit on the hip and leg bones with adequate back support and proper height alignment to a counter, table or desk.
To further study the features of the DRP-1 new exon, we aligned all the protein sequences we found for it and compared the alignment to a similar alignment of the ZIPk extra catalytic domain (Figure 2).
This protein has no B. subtilis homolog and a poor alignment to a B. licheniformis reductase, so it may provide peroxide stress resistance capabilities not available to these species.
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