The phrase "analyzing the alignment of" is correct and usable in written English.
You can use it when discussing the examination or evaluation of how well different elements or components correspond or fit together.
Example: "In this study, we are analyzing the alignment of the company's goals with its operational strategies."
Alternatives: "examining the correspondence of" or "evaluating the coherence of".
By analyzing the alignments of the positive hits, two PDCT homologs were identified (denoted as LuPDCT1 and LuPDCT2).
This is done by analyzing the alignments of all pairs of reaction paths (p, p′)∈ σ and by building a corresponding match-frequency matrix M whose rows and columns represent the reactions (hyperedges) of H1 and H2, respectively.
The theoretical foundation of CEO replacement is linked to agency theory, which analyzes the alignment of interests between top management as agents, and stockholders and creditors as principals (Barker et al. 2001).
Therein we analyzed the alignment of the ancestor sequence S0 and generated sequence S1 from it, whereas here we examine alignments of sequences S1 and S2 generated from the common ancestor sequence S0.
Using SVDetect and analyzing the alignment files of the 1,481 NGS samples from the 1000 Genomes Project, 18,867,464 translocated fragment pairs were called.
We analyzed the alignments of 5,015 orthologs from human, chimpanzee, orangutan, and macaque.
We analyze the alignments of structure pairs for which rigid alignment methods returned short alignments as compared to the length of the smaller protein.
To detect changes in evolutionary rate and signatures of positive selection, we analyzed the alignments of codon sequences and their corresponding tree under a maximum likelihood framework using the program CODEML in the PAML software package (Yang 2007).
We analyzed the alignments of DEF- and GLO-like sequences on their complete length or separated in the positions encoding the MIK region and the C-terminal domain, as defined in [ 71].
By analyzing the alignment rate increase of OPTIMA compared to Gentig, a 1.5 to 2.9 times increase on average, we computed the corresponding cost reduction to be 33 66 %, with an average cost reduction of 54 % for relaxed filtering of data (r) and 49 % for stringent filtering (s).
