The phrase "analyzed with the tools" is correct and usable in written English.
You can use it when discussing the methods or instruments used to examine or evaluate something.
Example: "The data was thoroughly analyzed with the tools provided by the research team to ensure accurate results."
Alternatives: "examined using the tools" or "assessed with the tools".
One case study of a detached house for 3 climates was analyzed with the tool developed in order to gain insights on the economic space of NZEB solutions and the influence of the climatic context.
Smoothed log ratios were then analyzed with the tool "Call copy number aberrations from aCGH data" [ 31, 32] to detect gains and losses.
The presence of TF-binding sites located at ±100 bp from p53-binding sites in ChIP-Seq fragments and composite patterns were analyzed with the tool MATCH that uses a library of about 600 positional weight matrices (PWMs) from the TRANSFAC database for vertebrate TFs.
In exactly the same manner, social procedures can be analyzed with the formal tools of logic and theoretical computer science.
Specifically, existing healthcare datasets can be analyzed with the proposed tools to test the allocational efficiency of medical treatments.
The seminal contribution for this theory is Kolm (1972), where the criterion of equity as no-envy is extensively analyzed with the conceptual tools of general equilibrium theory.
In order to be analyzed with the powerful tools of convex programming, an optimization problem must be formulable with a convex objective under convex constraints [ 63].
Separately, the gene lists were analyzed with the web tool KEGG (http://www.genome.jp/kegg/), using object search in KEGG pathways.
The conserved motifs of the 14 CsMAPK proteins were also analyzed with the online tool MEME.
The substantial properties of the CM protein database were broadly analyzed with the BiNGO tool [ 16].
