We analyzed the alignments of 5,015 orthologs from human, chimpanzee, orangutan, and macaque.
To detect changes in evolutionary rate and signatures of positive selection, we analyzed the alignments of codon sequences and their corresponding tree under a maximum likelihood framework using the program CODEML in the PAML software package (Yang 2007).
We analyzed the alignments of DEF- and GLO-like sequences on their complete length or separated in the positions encoding the MIK region and the C-terminal domain, as defined in [ 71].
Nucleotide diversity of Atlantys retrotransposons in different Oryza species was studied by analyzing the alignment of 137 Atlantys RT paralogs.
The theoretical foundation of CEO replacement is linked to agency theory, which analyzes the alignment of interests between top management as agents, and stockholders and creditors as principals (Barker et al. 2001).
By analyzing the alignments of the positive hits, two PDCT homologs were identified (denoted as LuPDCT1 and LuPDCT2).
We analyze the alignments of structure pairs for which rigid alignment methods returned short alignments as compared to the length of the smaller protein.
This is done by analyzing the alignments of all pairs of reaction paths (p, p′)∈ σ and by building a corresponding match-frequency matrix M whose rows and columns represent the reactions (hyperedges) of H1 and H2, respectively.
Using SVDetect and analyzing the alignment files of the 1,481 NGS samples from the 1000 Genomes Project, 18,867,464 translocated fragment pairs were called.
By analyzing the alignment rate increase of OPTIMA compared to Gentig, a 1.5 to 2.9 times increase on average, we computed the corresponding cost reduction to be 33 66 %, with an average cost reduction of 54 % for relaxed filtering of data (r) and 49 % for stringent filtering (s).
