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With that in mind, testing expert Fred Smith and Robin Jacobowitz of the State University of New York at New Paltz, have analyzed reading passages along with the accompanying constructed response questions.
Following the strategy explained in Methods, we analyzed reading frame compatibility of exons flanking translocation breakpoints, in 583 gene fusions coding for a potential fusion protein in which with both partner genes contribute an annotated protein domain.
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We analyzed read densities for 4,900 inferred transcription factor binding sites, conserved in closely-related yeast species and for which there is supporting evidence from ChIP-chip experiments [19].
Read length averaged 235 bp for a total of 1,283,097 analyzed reads (Tables 1 and 2).
We analyzed read trees and source trees using the weighted version of Fast UniFrac.
We analyzed reads in Geneious R7 (Biomatters) using the known sequences as a "reference" to which reads were mapped.
However, two additional telomere-like repeats were found in the analyzed reads – (TTAGG n and (TTTAGG n.
OTU1 occupied 98% of the analyzed reads obtained from crow 1, 70% of those from crow 2, and 81% of those from crow 3.
Accordingly, analyzed reads corresponding to a short portion (here, 300 bp) of the TE can be assumed to represent individual TE copies.
Since, the analyzed reads were relatively short and we allowed mismatches, a large number aligned to multiple genome positions (green part Figure 1).
For each individual nucleotide type, sequencing error rates were calculated by dividing the total number of discordant base reads by the total number of analyzed reads in all lines at all sites.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com