The phrase "analyzed modules" is correct and usable in written English.
It can be used when referring to modules that have been examined or studied in detail, often in a technical or academic context.
Example: "The analyzed modules provided valuable insights into the system's performance and efficiency."
Alternatives: "examined components" or "assessed units".
A significant validation criterion of our approach was to analyze modules in terms of protein complexes they contain.
While analyzing modules against 100 random samples from the merged dataset, we found that module preservation (mean Z-summary scores) ranged from 6.86 to 30.27 (Fig. 3b).
The authors used a computational approach to analyze modules of genes with a common regulation that are affected by specific DNA polymorphisms.
Module level analysis has been extensively applied in genome wide level analysis, exploring the organization of biological systems from identifying modules to reconstructing module networks and analyzing module dynamics.
The WGCNA package includes statistical tests to analyze module preservation across different datasets [ 76].
Group-wise effects on Ki-67 staining intensity for genes in the two proliferation modules were analyzed per module by comparing the mean module Ki-67 intensity to a random intensity distribution based on 10,000 sampled gene groups of the same size as the assayed module.
We analyzed two modules related to cell cycle, and the OCT1 transcription factor, respectively.
Genes robustly expressed in glycogen trophoblast cells (Prl6a1, Prl2a1, Prl7b1, Prl7c1, Prl8a9) were analyzed for modules of transcription factor binding sites that occur in all five promoter regions.
In contrast to the single gene-based analyses in which individual genes are tested for their correlation to a phenotype of interest (e.g. tumor grade or stage), the module-based approach analyzes modules as units and identifies co-expression modules that are significantly correlated with the phenotype, i.e. potential module biomarkers.
Since module B is the by far largest module and highly enriched for F. graminearum responsive genes across all five lines, we further analyzed this module by splitting it into smaller submodules (deepsplit = 4; minimum module size = 10).
