Exact(2)
We analyzed list of genes for various functions of our interest including seed development, oil-related, protein-related and some other functional groups of interest.
The application of our statistical filter for a maximal acceptable FDR suggested that there are (statistically estimated) 25, 23, 6 and 1 false positive genes in the analyzed list of differentially regulated genes at 0 h, 2 h, 4 h and 16 h, respectively.
Similar(58)
We analyzed lists of genes differentially expressed under different conditions (days after exposure, treatment, and their combinations) in a variety of ways.
The genes in the analyzed lists were ordered from the highest to the lowest average deviation from the mean of the relative transcript abundance value calculated across samples.
Table 1 Steps in the availability/reliability assessment Step name Description Result System's states description Determination of the basic functional states for the system configuration and for every function to analyze List of all functional states.
The database for annotation, visualization, and integrated discovery (DAVID) was used to analyze list of genes derived from high-throughput genomic experiments 22 and to identify over-presented GO categories in biological processes with a P-value less than 0.05.
Vol. II of the set will analyze lists 7-25, including the years of Metterling's private laundress and the pathetic misunderstanding with the Chinese on the corner.
RatMine allows researchers to view multiple ontology enrichments simultaneously when analyzing lists of objects.
One of the main uses of GO annotation is to analyze lists of genes or summarize experimental results by GO Enrichment analysis or GO slimming.
With our method it is not only possible to analyze lists of genes, as done in (Hahne et al., 2008), but to give predictions for individual genes of interest.
Gene lists: We analyzed the list of human or mouse genes from the UCSC GoldenPath database "known gene" table intersected with the microarray platforms used (independently in human and mouse analysis).
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