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The total organic carbon (TOC) and chloroform bitumen contents of 41 samples were analyzed following the method of Stax and Stein (1993).
Digestion time-course was analyzed following the method developed by Rees [ 42] to obtain kinetic data.
Data from the real-time, quantitative PCR were analyzed following the method described elsewhere [ 21].
Cellulose, hemicellulose, and lignin contents were analyzed following the method of Lin et al. [ 8].
PM samples were analyzed following the method of Kim and Carlson (2007) with minor adaptations.
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Differential expression between each pair of conditions was analyzed following the methods as implemented in DESeq v1.10.1 [ 34].
The remaining whole body constituents (water, protein and trace mineral) were analyzed following the methods outlined in Crossin and Hinch (2005).
Leaf chlorophyll content was analyzed following the reported method (Porra et al. 1989).
The proximate compositions of the dietary ingredients were analyzed following the standard method given by Association of Official Analytical Chemists AOAC Association of Official Analytical Chemiststs) 1980).
The physical properties of the sample, such as bulk density, specific gravity, and moisture content were analyzed following the testing method described by Wesche et al. (1989).
The qRT-PCR data was analyzed following the Pfaffl method [ 121].
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