The phrase "analyze the transcriptome in" is correct and usable in written English.
It can be used in scientific or research contexts, particularly in discussions related to genomics or molecular biology.
Example: "In this study, we aim to analyze the transcriptome in various cancer cell lines to identify potential biomarkers."
Alternatives: "examine the transcriptome in" or "study the transcriptome in".
We have established a combined LM/RNA-seq approach to analyze gene expression in developing fungal sexual structures, and used it to analyze the transcriptome of young fruiting bodies in the wild-type and the sterile mutant pro1 of S. macrospora.
In this study, we used both MPSS and SBS to analyze the transcriptome of the developing rice seeds in five cultivars that differed in milling yield and eating quality.
In this work, we have used RNA-seq to analyze the transcriptome changes associated with CDR acquisition in a pair of clinical isolates in the human pathogen C. albicans.
Additionally, we rather tend to analyze the transcriptome as a whole, identifying trends in global changes.
To investigate the effect of spl5 mutation on the genes expression in rice, we analyzed the transcriptome profiles in spl5-FL (few lesions) and spl5-ML (many lesions) and WT leaves.
In the present study, we analyzed the transcriptome changes in Glycine soja roots under NaHCO3 treatments using Affymetrix® Soybean Genome Array.
Based on the data generated, we discuss the respective performances of the different protocols in detecting the non-polyadenylated and non-coding fractions of the transcriptome, and their impact for analyzing the transcriptome landscape in general.
Analyzing the transcriptome and intragenic integrations in engrafting cells, we observed stronger correlations between in-gene integration targeting and transcriptional activity for gammaretroviral and lentiviral vectors than for alpharetroviral vectors.
In addition, we analyzed the transcriptome atlas of WRKY genes in different tissues under normal conditions, and found notable differential expression between groups, which indicated broad functional divergence in this family.
