Because three or more sequences of biologically relevant length can be difficult and are almost always time-consuming to align by hand, computational algorithms are used to produce and analyze the alignments.
The bootscan option of SimPlot was used to analyze the alignments.
To analyze the alignments, we used the samtools software package [27] to convert the file to the BAM format, and then to the BCF format (binary encoding of the Genotype Likelihood format) via its mpileup command.
CB proposed the experiments and helped analyze the alignments.
We analyze the alignments of structure pairs for which rigid alignment methods returned short alignments as compared to the length of the smaller protein.
Nucleotide diversity of Atlantys retrotransposons in different Oryza species was studied by analyzing the alignment of 137 Atlantys RT paralogs.
By analyzing the alignment parameters, two angular distributions (P(θ r ) and P(φ r )), and PDDCS00, we can get a view of the stereodynamical information of the title reaction.
The theoretical foundation of CEO replacement is linked to agency theory, which analyzes the alignment of interests between top management as agents, and stockholders and creditors as principals (Barker et al. 2001).
The ability to identify misaligned segments coupled with the use of measures insensitive to misalignment reduces the risk of systematic misalignment and provides opportunities to correct and re-analyze the alignment.
