Sentence examples for analyze tandem from inspiring English sources

Scaffold (version Scaffold-2.02.01) was used to analyze Tandem MS/MS based peptides and to identify the proteins.

Motivation: Mass spectrometry (MS) instruments and experimental protocols are rapidly advancing, but de novo peptide sequencing algorithms to analyze tandem mass (MS/MS) spectra are lagging behind.

One recently developed approach to discover PTMs on a genome-wide scale is to analyze tandem mass spectrometry (MS/MS) data using an unrestricted (so-called 'blind') PTM search engine.

Here we analyze tandem repeat variation in 35 colorectal tumors and their matched normal genomes in proximal (near-gene) promoter regions and exons of 18,439 genes, as well as in a smaller subset of genes in known cancer-associated pathways.

This paper presents a Petri net modeling approach for analyzing tandem AGV systems.

Proteins were identified by analyzing tandem mass spectra with the Sequest algorithm (Thermo Electron) as described [30] using the human subset of the UniProt/Swiss-Prot protein database (UniProt release 5.1, http://www.expasy.org/sprot).org/sprot

When manually analyzing tandem MS spectra, chemists try to annotate fragmentation peaks and identify relations between fragments, resulting in fragmentation pathways.

By analyzing tandem repeats across the genome, we found that frequencies of repeats are higher in regions adjacent to those with high curvature value.

We also analyzed tandem duplicates (see Materials and Methods) and found that only 23% of these families contain a duplicate gene that shows testis-specific expression, whereas the other gene is expressed in the whole adult body (table 1).

To discover PTMs on a genome-wide scale, there is a recent surge of interest in analyzing tandem mass spectrometry data, and several unrestrictive (so-called 'blind') PTM search methods have been reported.

It is worth noting that different conclusions would have been reached if we had analyzed tandem domain diffusion using only one-component models (dashed lines in Figure 4), as these models produced significantly faster diffusion constants for C2AB-WT and C2AB-FE4 (1.12 ± 0.08 and 1.14 ± 0.11 μm/s, respectively).