Sentence examples for analyze alignment from inspiring English sources

MGAviewer can be used to analyze alignment data not only for prokaryotic species but also for viruses and small eukaryotic organisms.

FastTree 2 can analyze alignments with tens or hundreds of thousands of sequences in under a day on a desktop computer.

BEDTools version 2.12.0 [ 22] was used to analyze alignments.

Such a region was defined by (1) no overlap of signals along at least 100 bp, (2) >80% analyzed alignment positions, and (3) less than 50 bp of continous gaps.

Two non-parametric statistics are shown to be somewhat insensitive to misalignment errors, providing increased confidence in contact prediction when analyzing alignments with erroneous regions because of an emphasis on they emphasize pairwise covariation over group covariation.

We therefore further analyzed alignments without repeats as well as alignments without repeats and without any gaps.

> -wrap-foot> We analyzed alignments of all post-WGD histones for each of the five genes showing evidence of conversion.

By analyzing alignments of assembled contig sequences, we initially obtained 99.69% identity between AY2 and MCO456.

We have analyzed alignments of 3079 orthologous genes from human, chimpanzee, mouse, rat and dog to detect signals of positive selection.

Accordingly, in the present study, we used this date interval for calibration after incorporating the orthologs from the red alga Cyanidioschyzon merolae into the analyzed alignments.

We analyzed alignments of repetitive TE-like sequences from each species for evidence of C-to-T mutations and biases in adjacent nucleotide context.