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All computations needed for controller design and system analysis were implemented using a freely available software toolbox.
The complete method and subsequent analysis were implemented using MATLAB software (version R2009b, Mathworks, Natick, MA).
The analysis were implemented using the GLM function in R [ 9].
Clustering and PCA analysis were implemented using Partek Genomics Suite version 6.5.
ML-based analysis were implemented using CODEML of PAML package v4.0b [ 20].
Stepwise multiple regression analysis were implemented using the REG procedure of SAS 9.2 (SAS Institute Inc., Cary, NC), and the resulting models were evaluated for goodness of fit based on standard regression analysis procedures [ 23].
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Implementation: Gene expression analysis was implemented using the free software Bioconductor version 2.11.1.
In practice, the DDD analysis is implemented using a regression framework.
The cortical analysis is implemented using a bank of modulation filters operating in the Fourier domain.
The corresponding stability and convergence analysis is implemented using some Lyapunov-like analysis.
The drought analysis is implemented using Standardized Precipitation Index (SPI) in terms of SPI-1, SPI-3, SPI-6, SPI-6AS (SPI-6 April to September) and SPI-12.
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