The phrase "analysis were designed based on" is not correct in written English due to subject-verb agreement issues.
You can use it when discussing how analyses were created or structured, but it needs to be corrected to "analyses were designed based on."
Example: "The analyses were designed based on the latest research findings to ensure accuracy and relevance."
Alternatives: "analyses were developed from" or "analyses were formulated based on".
Two primers pairs for the qRT-PCR analysis were designed based on the CDS sequences of the two genes (Additional file 2: Table S2).
Since the Affymetrix DNA chips used for the analysis were designed based on the sequence of the laboratory yeast BY4742, a primary concern related to the quality of the microarray data.
The forward primers for qPCR analysis were designed based on entire known mature miRNA sequence, with additional 3 "A"s at the 3′ end to improve amplification specificity (Table 2).
In order to perform the analysis, data analysis systems were designed based on three neural networks: multilayer perceptron neural network (MLP), generalized regression neural network (GRNN) and probabilistic neural network (PNN).
Fifty primer pairs for expression analysis of Ra-induced clones were designed based on the sequences of raphanusanin-induced ESTs using Primer3 software (see additional file 8).
The Osteo-Promoter Database (OPD) summarizes the information about genes and promoters were designed based on analysis of resources covering skeletal cells.
The binding region in hTIM-1 to EBOV GP was mapped by chimeras and mutation assays, which were designed based on structural analysis.
The reaction and separation parts of the system were designed based on detailed analysis of production stages.
The first control scheme was designed using the RGA (Relative Gain Array) analysis whereas the other two control schemes were designed based on heuristics.
MiRNA-mRNA networks were designed based on integrative analysis of the microarray data.
Total RNA from each region of interest was isolated by microdissection following the same procedures as for microarray analysis, and primers for ferret gene homologs were designed based on the same ferret-specific sequences.
