Sentence examples for analysis the lists of from inspiring English sources

In order to obtain Gene Ontology enrichment analysis, the lists of differentially over and underexpressed genes (FDR < 0.05) were considered in the tool DAVID [ 24].

Seeking to functionally explore the two sub-networks evidenced by the above analysis, the lists of protein-coding nodes populating each of them were analyzed for biological functional annotations using the GOrilla web tool (http://cbl-gorilla.cs.technion.ac.il/).ac.il/

For GO (gene ontology) analysis, the lists of differentially expressed genes were submitted to the AgriGO GO tool [ 28], http://bioinfo.cau.edu.cn/agriGO/ for Singular Enrichment Analysis with the default setting for Fisher's exact test adjusted for multiple testing with the Benjamini-Yekutieli method and to MapMan [ 27].

For principal components analysis, the list of variables and respective factor loadings are presented for the ten fist principal components (PC1 – PC10), which are enough to explain 70.87% of the variance in the original dataset.

Microarray data were confirmed by qPCR expression analysis (the list of used primers is available in table S1) (Fig. 3C).

To identify genes with few or no prior studies for further analysis, the list of genes induced by etsrp OE was compared to the data sets for cloche mutants [13], [14].

For the latter analysis, the list of human-mouse orthologs was obtained by concatenating Affymetrix (http://www.affymetrix.com) and Ensembl Biomart (http://www.ensembl.org/biomart/martview/) annotation tables and including only one-to-one human-mouse orthologs.

It remains that even after such an analysis, the list of proposed miRNA targets still require a direct validation by Western blot analyses and/or a reporter plasmid assays.

In the current analysis, the list of research papers published as a result of the project will first be refined as described above.

For differential expression analysis the list of newly identified small RNAs were joined with already annotated sRNAs and previously predicted sRNAs [ 17].

For the IPA analysis, the list of 4,448 RefSeq gene transcript IDs was uploaded and, when compared against the reference set Ingenuity Knowledge Base (Genes Only), a list of 4,377 "analysis-ready molecules across observations" was created.