Exact(3)
In our analysis promoters correspond to the 2 kb upstream regions from the transcription start site (TSS) of refseq genes.
For general enhancer analysis, promoters such as the heat-shock protein (HSP) 70 TATA promoter are thought to be sufficient.
Since NRF2 has been implicated in the expression of some OXPHOS subunits, for this analysis, promoters were analyzed for the presence of both ETSF (family) and NRF2 (single factor) binding sites.
Similar(57)
For the analysis, promoter sequences were aligned relative to the TSS.
For comparison, we included in our analysis promoter regions from B73 and W23 lines.
For promoter analysis, promoter sequences (-750, +250) were retrieved from the promoter database at and screened for GATA3 consensus sites using the MatInspector promoter analysis tool [ 13].
In addition to phylogenetic analysis, promoter regions of tdh genes harboring Vibrio spp. and their amino acids were analyzed.
We used mutational analysis, promoter reporter assays, and electrophoretic mobility shift assays to determine whether PAX3-FKHR binds to the promoter region of the target gene.
The soybean cultivar, Williams 82, was used in this study for the expression profiling analysis, promoter cloning and hairy root transformation.
We used a combination of cluster analysis, promoter analysis, WCGNA, and gene annotation to predict the functions of nine previously uncharacterized LSGs (Table 4) from a starting set of 49 (18%).
In case of promoter methylation analysis, the promoter region chosen to be investigated may be of influence on the outcome, as described before.
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