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In the analysis of the repeat structures for the STR loci, a new allele variant was found for allele 18 in the vWA locus.
Analysis of the repeat length patterns indicated that the repeat region was interrupted by 1, 2 or 3 CAA codons.
Analysis of the repeat contents using the computer program RADAR, followed by manual adjustment, revealed that this protein contains a large central repetitive region consisting of two types of multiple tandem repeats (Fig. 2A).
A deeper analysis of the repeat content of this genome would require such a combined approach.
For the analysis of the repeat families and genome wide overview scanning, we considered all tags mapped back to the genome with a tolerance of low-confidence mapping.
Analysis of the repeat values over the three time points of the trial is shown in table C in appendix 2 on bmj.com.
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We examined seismic velocity changes at Sakurajima from 2011 to 2014 by combining coda-wave interferometry analysis of the repeated active seismic experiments and seismic interferometry analysis of ambient seismic noise.
Analysis of the repeat-masked reads bears this out: MSLL- Hpa reads were 2.5 times as likely to be masked in the last 100 bp compared to the first 100 bp, while MSLL- Sal reads were 50% more likely, and UF control sequences were equally likely to be masked at either end.
Clustalw [ 40] and MEGA [ 41] software were used for phylogenetic analysis of the repeats.
The analysis of the repeats and of the phylogenetic tree of Fig. 6 favours a more recent origin of TRGV9-1 than TRGV2-1.
Analysis of the repeats from percomorphs and zebrafish indicate that repeats have been added and lost from pclob in discrete events that inserted or deleted single exons.
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