The phrase "analysis of the aligned" is correct and usable in written English.
It can be used in contexts where you are discussing the examination or evaluation of items or data that have been aligned in some manner.
Example: "The analysis of the aligned data revealed significant trends that were previously unnoticed."
Alternatives: "evaluation of the aligned" or "examination of the aligned".
Phylogenetic analysis of the aligned sequences using the tri5 sequence of Fusarium pseudograminearum as an outgroup revealed clear separation between one group consisting of F. poae and F. kyushuense and another consisting of F. sporotrichioides and F. langsethiae.
Simplot [20] software was used to complete a bootscan analysis of the aligned HAdV-D genomes.
SimPlot [20] software was used to complete a bootscan analysis of the aligned hexon genes of the available HAdV-D genomes.
The algorithm described in the Methods Section enables analysis of the aligned reads and the identification of sequence incongruities between the predicted gene models and the observed transcriptomic data.
The algorithm described in the Methods Section enables analysis of the aligned reads and the identification of sequence incongruities between the predicted gene models and the observed transcriptomic data (Figure 1, B).
Analysis of the aligned sequence data was done in R/Bioconductor.
Principal component analysis (PCA) of the aligned dataset revealed that the different brands did not form separate groups.
Phylogenetic relationships were determined by maximum likelihood analysis [ 53] of the aligned nucleotide sequences.
As with the pan species analysis (Fig. 1d), variability of the aligned species D fiber-knobs (Fig. 2e) confirmed that the β-strands comprising the hydrophobic core of the trimers are highly conserved, with β-strands demonstrating a high degree of overlap in both spatial position and sequence variability (Supplementary Figure 2B).
We used the Akaike information criterion (AIC) to determine the log likelihood of 56 and 79 different substitution models for the analysis of our aligned cDNA and protein sequences, respectively, using the programs Modeltest [33] and ProTest [34].
The phylogenetic analysis of pol aligned sequences was performed by the maximum-likelihood method of MEGA version 5.05.
