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In Fig. 1, we showed the wavelet analysis of the Aa time series.
The epochs at which these extrema occur are similar to those found from the analysis of the aa index by Elias et al. (2011).
Analysis of the AA sequence of human HDx-1 using the web application SitePrediction identifies AAs 12-17 as having the highest degree of specificity for both calpain 1 and calpain 2, with a secondary recognition site at AA 5-10.
The analysis of the aa changes that occurred on the V3 region (Fig. 5Bii, lower panel) indicated that a great number of changes were observed in this region (in agreement to be a highly variable region) explaining the high subtype specificity observed (we could only detect the specific responses with the clade-matched peptide, (i.e.: IIIB with IIIB, but not with the consensus B peptide).
The phylogenetic analysis of the aa sequence data showed that all three OTUs of H. macropi and Ma.
In contrast to that, analysis of the aa sequences of CPPs shows that, in this protein family, the general cysteine spacing pattern is C 38 CXXC 54 C.
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Analysis of the total AA content revealed that the suppressor D3 4 had an AA content comparable to the Col-0 wild type, whereas that of vtc1-1 was only approximately 40% of that of the wild type.
Analysis of the plasma AA profile, together with markers of glucose and lipid metabolism, will shed light on metabolic regulation.
Analysis of the protein aa sequences with the HHpred platform yielded predictions for the number and the arrangement of protease and PDZ domains in each Deg/HtrA protease.
We evaluated this prediction by NMR analysis of the 40 aa terminal region of BCNT-C, which the program suggests is mostly disordered.
Sequence analysis of the deduced AA sequence showed that CvHSP90 contains the five typical signature motifs of the HSPs [ 10, 11, 36].
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