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High-throughput technologies have now prompted different comprehensive approaches toward functional analysis of lists of differentially expressed genes/proteins, Gene Ontology [ 27] being the most popular of them.
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PCR and fragment size analysis of listed loci were carried out as described in Sammler et al. [ 36].
In order to analyze potential functional trends in the gene lists identified, we performed a functional analysis of the lists of differentially expressed genes.
The transcripts lists resulted from Cuffdiff were then analysed using GeneCodis3, a web-based tool for the ontological analysis of large lists of genes [ 35].
But analysis of the lists of dead Nepalese workers showed that more than two-thirds died of sudden heart failure or workplace accidents.
However, a formal analysis of these lists is an interesting future work.
From our analysis of mailing lists, the release team leads the discussions to define the requirements of a GNOME Release.
According to our analysis of mailing lists and follow-up interviews, however, the release team prioritizes in four of them.
Recently, the UK Home Office estimated 10-13,000 people are in some form of modern slavery in the UK, through an analysis of overlapping lists of reported victims (see further, Bales, Hesketh and Silverman, "How Many Victims?" Significance, 12(3) 2015).
Functional analysis of gene lists was performed in DAVID [21], [88], using the PANTHER functional annotation classes.
To summarize, homoscedastic (VarMixt, limma, RVM and ANOVA), heteroscedastic (t-test and SMVar) variance modeling strategies are well discriminated by a similarity analysis of gene lists.
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