Compared with a traditional 'genome-browser' representation, canvas interactivity allows users to seamlessly navigate through an entire prokaryotic genome in a few seconds, facilitating discovery and analysis of inconsistencies between annotated genes and newly identified ORFs.
One sample of the ACVIM C group was removed from further analysis because of inconsistency of expression levels of miRNA compared to other samples.
One sample of the DCM group was removed from further miRNA microarray analysis because of inconsistency of expression levels compared to other samples.
Three individuals were excluded from the progression-free survival analysis because of inconsistency in the dates for diagnosis and progression or recurrence. 1 expressed in years; 2 expressed in months.
Author's response: We have added an analysis of the inconsistency scores for the highly abundant proteins.
A careful analysis of such inconsistencies in genomic locations in spite of conserved synteny shows that differences arise because of different host gene annotation (both presence/absence and structure) in the 3 organisms.
However, it is important to note that transcriptional similarities across these three systems may be underestimated from our analysis because of inconsistencies in the datasets such as analyzing different life stages and tissue types.
Nonmonotonicity and potential cyclic dependencies pose additional challenges that call for suitable methods of inconsistency analysis.
A focus of interest in the future is an extended analysis of the translation inconsistencies, for example of when one word in the source language is translated into different words in the target language.
Exploratory data analysis showed inconsistency of population estimates for the regions of Romania.
