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Figure 7 Results from the NLSA and SA analysis of experimental datasets.
T.G.K., C.W., Z.H., K.H., and B.D.S. carried out quantitative analysis of experimental datasets.
Proteins on the pathway have been annotated with Ensembl identifiers to enable the import and analysis of experimental datasets.
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The statistical evaluation of experimental datasets is a central part of data analysis.
Although those studies performed a profound analysis on a few datasets, we think a superficial comparison on a large number of experimental datasets is more important than a profound one on a few experimental datasets when estimating the methods' practical ability to detect DEGs, as the superficial comparison on a large number of datasets can also prevent selection bias regarding the datasets.
As new technologies develop, new types of experimental datasets will become available and should be integrated into the computational and manual gene prediction process and analysis pipelines.
Figure 3 Three representative examples of experimental datasets.
The analysis of the experimental datasets illustrated that inclusion of additional objectives from the same dataset could significantly improve our ability to identify key regulators of relevant biological processes.
ProDy complements existing tools by allowing the systematic retrieval and analysis of heterogeneous experimental datasets, leveraging on the wealth of structural data deposited in the PDB to gain insights into structure-encoded dynamics.
A large amount of material has been presented in this manuscript, beginning with the presentation of a genome-scale reconstruction and model of M. tb, iNJ661, followed by experimental validation and use of the model for integration and analysis of multiple experimental datasets.
In analysis of two experimental datasets with reduced sample sizes and mixed censored data, it was shown that the bootstrapping reduce significantly the confidence intervals as well.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com