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This left 121 practices that we believed would be suitable for an analysis based on linkage to problem headings.
We identified 20 practices that were using the system in ways that would be unsuitable for any analysis based on linkage.
For the turkey, as for other agricultural animal and crop species, a primary area of interest is trait (often QTL) analysis based on linkage maps, increasingly derived using high density SNP arrays.
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Both Hellinger distance and Bray-Curtis similarity, based on species presence-absence data, were used for the cluster analysis based on "Ward" linkage.
The overall results of the hierarchical cluster analysis based on average linkage are shown in Fig. 5.
To characterize these commonly up-regulated genes in more detail, first we performed hierarchical cluster analysis (based on average linkage clustering of ratios) comparing human 2fTGH with hST2-U3C and mouse MEF-WT with mST2-MS1KO.
To overcome the problem, an association analysis was performed in our AIL, with the assumption that enough power would be gained by adding information from dams within families of sires homozygous for the QTL, that were uninformative in the QTL mapping analysis based on familial linkage.
Here we report results from a QTL analysis, based on a comprehensive linkage map, for body-weight traits using our intercross between the HWS and LWS lines.
QTL analysis based on high-resolution linkage maps is now routinely performed in various plant species and has resulted in the mapping loci of many genes involved in agronomically important traits.
If we compare our current QTL analysis based on an improved linkage map with our previous QTL analysis [ 2] there are as many as six previously reported loci (Growth2, Growth3, Growth8, Growth10, Growth11 and Growth13) that did not reach statistical significance in the present study.
Here we present a revised QTL analysis based on a high-density linkage map that provided a more complete coverage of the chicken genome.
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