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Maximum, average, and median gaps were calculated for each analysis based on genomic position of SNP on the bovine UMD3.1 genome assembly.
An analysis based on genomic sequence can reveal the relationships among strains more accurately, so additional genome analysis is required to resolve the observed discrepancies.
The distribution analysis based on genomic location was also carried out.
As already reported by [ 41] for this same population, two breeding subgroups were observed in a principal component analysis based on genomic relationships [see Additional file 3].
Further analyses suggested that higher-than-expected accuracies were observed for traits for which EBV means differed significantly between two breeding subgroups that were identified in a principal component analysis based on genomic relationships.
With the expanding knowledge of the mutation spectra of different patient populations, molecular analysis based on genomic DNA can be a reliable and accurate way of diagnosing GSDIa without invasive liver biopsies for enzyme tests.
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Moreover, by performing unsupervised hierarchical clustering analysis based on the genomic copy aberrations, two distinct genomic subgroups of OCCCs (cluster-1 and cluster-2) that did not significantly differ in terms of their clinicopathological and histological features were identified.
To evaluate the similarity of the genomes in terms of environmental pressure, we performed an analysis based on the genomic signature of tetranucleotides by Tetra algorithm (Karlin et al. 1997; Teeling et al. 2004; van Passel et al. 2006; Nishida et al. 2012).
Our phylogenetic analysis based on mitochondrial genomic sequences is useful for comparing morphological features to phylogenetic relationships among the sharks.
Moreover, the Petri-net model which is a graph-based mathematical method for the description of distributed systems has also been applied in drug combination analysis based on the genomic data.
The LDMIP algorithm also yields probabilities of paternal and maternal inheritance at the marker alleles for all animals in the pedigree [ 15], which can be used to set up a linkage analysis based on the genomic relationship matrix G LA by setting up such a relationship matrix at all marker positions and averaging across positions [ 8, 9].
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