The phrase "analysis based on gene" is not correct in written English.
It should be "analysis based on genes" to refer to multiple genes or "analysis based on a gene" for a singular reference.
Example: "The study conducted an analysis based on genes to understand the hereditary patterns of the disease."
Alternatives: "gene-based analysis" or "analysis derived from genes".
Our three-mode tensor-based proteomic analysis, based on gene ontologies and validated using hMSC plated on laminin-5, has revealed two independent mechanisms by which human mesenchymal stem cells (hMSC) undergo osteogenic differentiation.
Finally, Gene Network analysis (based on gene expression changes and nearest molecular neighbours) demonstrated a large number of regulated gene expression networks in skeletal muscle of septic patients.
MtED provides functional category analysis based on Gene and GeneBins Ontology, and other Web-based tools for querying and retrieving query results, browsing pathways and transcription factor families, showing metabolic maps, and comparing and visualizing expression profiles.
Functional enrichment analysis based on gene ontology (GO) database was performed by using David 6.7 program (http://david.abcc.ncifcrf.gov/) and protein-protein interactions (PPI) network of DEGs were constructed using STRING database (http://www.string-db.org/).
Gene network analysis based on gene profiling data may represent a powerful method to predict key gene regulators and identify shared pathways among distinct categories of complex diseases.
A cladistic analysis based on gene content of isolates allowed strains circulating in each infected family to be defined (Fig 1, 2, 3).
Hierarchical cluster analysis based on genes with expression profiles highly similar to that of PDGFC divided the biopsies into two groups corresponding well with the histological characterization of the tumours, although it did not result in an absolute distinction between classical and clinically aggressive PTCs.
To incorporate biological information into algorithms for identification of meaningful gene sets, most of the existing methods utilize functional category enrichment analysis based on Gene Ontology (GO) [4] [7].
Here we extracted information from all of the included studies on DEGs in EAT samples and performed a meta-analysis based on gene-networks consisting of upregulated and downregulated genes in EAT to identify genes that may be involved in disease pathogenesis.
To address specifically all likely phenotypes of the pimonidazole-positive tumours, we used a supervised gene set analysis based on all genes on the array and 21 gene sets representing the significant biological processes from the GO analysis.
As the method requires independent tests, we did the meta-analysis on the GWAS pathway analysis and a pathway analysis based on a gene list of differentially expressed genes.
