All graphs and statistical analyses were generated with GraphPad Prism Version 7. Data is presented as box and whisker plots with minimum and maximum and individual data points.
The incoherent seismic input motions for the hard rock site used for the analyses were generated using the computer program INCOH that works together with SASSI.
Data files, calibration, image alignment, section thickness estimation, tracing, naming, 3D reconstruction, and quantitative analyses were generated using our custom designed software Reconstruct, which is freely available together with a detailed user's manual (Data Citation 1: Open Connectome Project http://dx.doi.org/10.7281/T11Z429Q 35,59.org/10.7281/T11Z429Q 35,59
All analyses were generated with SAS Statistical Analysis Software, Version 9.1.
The analyses were generated from the abundance data at the genus level.
The statistical analyses were generated using SAS software, version 9.3 for Windows (SAS institute, Cary, NC, USA).
Extensive data from IDA analyses were generated and the IDA curves only for the severe MS-severe AS are plotted in Fig. 12.
Upstream regulation, diseases and functions and canonical pathway analyses were generated using the Ingenuity Pathway Analysis tool (IPA, Ingenuity® Systems, www.ingenuity.com; Redwood City, CA) with Fisher's exact test (p value <0.05).
Graphs, Student's t-test and ANOVA statistical analyses were generated using Microsoft Excel 2003.
Random effects analyses were generated with each of these samples for each task contrast.
The functional analyses were generated through the use of Ingenuity Pathways Analysis (IPA) v7.6 (www.ingenuity.com).com
