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Clade support in BI analyses was assessed using posterior probabilities.
Clade support in maximum likelihood analyses was assessed using non-parametric bootstrap re-sampling (100 replicates).
The trustworthiness of our analyses was assessed using four criteria: prolonged engagement with data, credibility, transferability, and confirmability [28] [29].
Nodal support for the MP and ML analyses was assessed using bootstrap analyses with 1000 replications.
Comparison of mean Ct values in real-time gene expression analyses was assessed using the independent samples T-test.
Convergence of both analyses was assessed using a plot of the generations versus the log probability of the data.
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Post hoc analyses were assessed using the HSD Tukey test whenever necessary.
Node support values in MP analyses were assessed using non-parametric bootstrapping for 1000 pseudo-replicates (10 random taxon addition sequence replicates per pseudo-replicate).
Statistical analyses were assessed using a one-tailed, paired t-test.
Node support values in MP analyses were assessed using 100 jacknife replicates.
Linkage disequilibrium coefficient (D′) and haplotype analyses were assessed using the Haploview 4.1 program.
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