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The cluster analyses using the single linkage, complete linkage, and average linkage methods did not produce clinically interpretable results.
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Sensitivity analyses (Web Appendix 2) showed that although results from some of the individual studies can be sensitive to changes in assumed infection and reinfection rates, none of the results for the pooled analyses using the single-rate model were changed by more than a multiplicative factor of 4%.
The acceleration data were analysed using the single up-down (Z) axis and indicate that during the sampled time birds spent an average of 32.8±4.1% of the sampled time active when roosting in the cave, but only 3.0±0.1% of the time active when roosting outside the cave (Fig. 4a, b)).
Correlation between performance of single grammar classifiers and helix pair structure and sequence was analysed using the single grammars generated in the LOOCV scheme.
Each sample was analysed using the single-line scan method, every time in three different places on its surface.
Western blot analyses using the anti-IFT27 antibody showed a single band migrating at a position close to the predicted size of 20 kDa in wild-type cells.
Alarcón et al. (25) performed quantitative trait linkage analyses using the ADI-R age of first single words, age of first phrases, and repetitive and stereotyped behavior total score from 123 families of the Autism Genetics Resource Exchange AGREE) and found suggestive evidence for linkage on chromosome 7q for age of first words.
Table 1 describes the results of the single-SNP association analyses using the parenTDT test.
In order to effectively model genotype by environment interaction (GxE, with environments represented by the different treatments) through QTL by environment interaction (QTLxE), each trait was analysed individually using the single trait - multiple environment option of the program.
Because these analyses use the data obtained with single primer sets, their results are comparable with those from the majority of published reports.
Positively selected sites (Codon-specific analyses of dN/dS) was identified using the Single Likelihood Ancestor Counting (SLAC) analysis [ 18], a modification of the Suzuki-Gojobori method [ 19], available at the Datamonkey web side [ 18].
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