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We did all analyses using the Comprehensive Meta Analysis statistical program (version 2.2.50) and Stata (version 10).
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Findings from primary studies were synthesised in meta-analyses using the Comprehensive Meta-Analysis (CMA) program (Version 2.0) (Borenstein et al., 2009).
All data were analysed using the Comprehensive Meta-analysis, version 2 [ 33].
Genomes were analysed using the Comprehensive Antibiotic Database (CARD; http://arpcard.mcmaster.ca) for genes encoding antibiotic resistance [ 27].
By comparison, the parsimony analyses still showed ambiguous ancestral states under the three character states (character 3, unordered; character 4; character 5, unordered) (see Additional file 4) although the same character state codings as in the likelihood method were applied and both sets of analyses used the identical comprehensive nuclear phylogeny.
All the analyses were performed using the Comprehensive Meta-Analysis software, version 2.2 (Biostat, Englewood, New Jersey).
All analyses were conducted using the Comprehensive Meta-Analysis (version 2.2, Biostat, Englewood, New Jersey) [ 48].
All analyses were performed using the Comprehensive Meta-Analysis software (version 2.2.046; Biostat, Englewood, NJ).
Comparative genomic analyses were performed using the Comprehensive Microbial Resource [ 91], Microbesonline [ 92] and String [ 93].
Analyses were performed using the Comprehensive Meta-Analysis Program, version 1.0.25.
All statistical analyses were performed using the Comprehensive Meta-Analysis statistical software, version 2.0 (Biostat, Englewood, NJ, USA).
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