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Molecular phylogenetic analyses of the host mussels showed that A. crypta constituted a monophyletic clade with other intracellular symbiotic (endosymbiotic) mussels and that A. pacifica was the sister group of all endosymbiotic mussels.
Disease resistance was assessed by a viral disease challenge test (infectious pancreatic necrosis) and gene expression analyses of the host response in selected organs.
Analyses of the host proteome gave further insights into characteristics of P. pastoris grown at different temperatures [ 24], osmolarity [ 22], UPR induction [ 25], and oxygen supply [ 21].
Because partitioned versus unpartitioned ML analyses of the host planthopper data yielded somewhat different topologies, TreeMap and ParaFit tests were conducted for both partitioned and unpartitioned ML host trees.
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Single crystal X-ray diffraction analyses of the four hosts revealed that the host molecules are held together by intensive non-covalent interactions, such as π⋯π and hydrogen bonding interaction at solid state, which can facilitate carrier transport and migration of excitons and improve the ability of thin film formation.
Phylogenetic analyses of the planthopper host data set were conducted using ML and BI methods.
With respect to the phylogenetic analyses of the echinoderm hosts, we used an asteroid and an ophiuroid in addition to those that were hosts for myzostomids, as these had a full complement of genes available (Additional file 1: Table S3).
Distributional and phylogenetic analyses of these host-derived viral sequences also suggested that viral acquisition of environmentally relevant genes of host origin is a more abundant and widespread phenomenon than previously appreciated.
Comparative analyses in regard of the host ranges of insect fungi showed a tendency toward contractions of various gene families for narrow host-range species, including cuticle-degrading genes (proteases, carbohydrate esterases) and some families of pathogen-host interaction (PHI) genes.
Our model also enables more detailed analyses of the effects of host factors (for example, age, innate, humoral and mucosal immunity), differences between virus strains, and environmental factors (temperature, humidity, air currents) in varying the importance of each mode of transmission.
To kick start genomic analyses of the pathogen and host, we took the unconventional step of rapidly generating and releasing genomic sequence data.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com