The phrase "analyses of alignment" is correct and usable in written English.
It can be used in contexts where you are discussing the examination or evaluation of alignment in various fields, such as linguistics, business, or research.
Example: "The studies included several analyses of alignment between the company's goals and employee performance."
Alternatives: "evaluations of alignment" or "assessments of alignment".
Analyses of alignments show that both point mutations and the additional sequences in the human genome contribute to the greater number of TATAATATA copies in the human sequence.
However, ML analyses of alignments with divergent regions either included or excluded did not change the detected patterns in relationships, therefore these regions were included in the final analyses.
The same methods were used for analyses of alignments of the UBA and UBL domains, except that the faster subtree-pruning-regrafting (SPR) algorithm, also with default parameters, was used instead of the TBR algorithm.
Maximum parsimony, neighbor joining and maximum likelihood analyses of an alignment of 50 concatenated protein sequences including a total of 19,836 aligned sites (Additional file 2), all yielded identical fully resolved topologies with high bootstrap support.
Consequently, phylogenetic analyses of this alignment resulted in poorly supported trees (not shown).
Phylogenetic analyses of the alignment were conducted using Protpar on the Phylip package [ 33] through the PIE Phylogeny Interface Environmentt) suit at.
Thus, Model 2 predicted two terminators as transcription termination factors, which were validated in analyses of multiple alignment of the corresponding DNA regions.
Collectively, incorporating systematic analyses of peptide alignment behavior into an approach to accurately assign functions results in more reliable quantification of gene abundances in metagenomic data sets.
PHYML (Guindon and Gascuel 2003) was used to perform maximum likelihood (ML) phylogenetic analyses of each alignment passing the PTP test.
Figure 2 shows results comparing DACTAL to the default 24-h analysis using SATé and to two-phase methods (RAxML analyses of leading alignment methods) on the more difficult 1000-taxon model conditions.
