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All images were analysed using tools from the FMRIB Software Library FSLL) (Smith et al., 2004).
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Preprocessing and statistical analyses were carried out using tools from FSL (FMRIB's Software Library, www.fmrib.ox.ac.uk/fsl).ac.uk/fsl
Results were analysed using appropriate statistical tools.
Several example problems were analysed using the design tool.
The transcripts lists resulted from Cuffdiff were then analysed using GeneCodis3, a web-based tool for the ontological analysis of large lists of genes [ 35].
The results from the first questionnaire were analysed using a standardized Microsoft Office Access-based consensus tool.
Data collection tools were piloted and revised accordingly.> Data from the two questionnaires were analysed using SPSS Statistics 19 and descriptive statistics were calculated.
The cells being analysed were extracted from the whole image and single Z sections analysed using the colocalization tool in the Zeiss Zen software.
In comparative metagenomic analyses, one can use tools to compare samples from different ecological niches and extract information that is common and/or unique to a specific environment.
Aside from the syntenic analyses using visualization tools, other programs have been developed to search for other types of information in comparative genomics.
Table 2 summarizes the results of analyses using these tools.
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