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Data were analysed using the using the statistical software package, SPSS release version 10.0.5 (SPSS Inc., Chicago, IL).
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Statistical analyses were conducted using the using JMP 7.0 and Statgraphics Plus v3 statistical software.
A TEG 5000 Haemostasis Analyser (Haemoscope Inc , USA was used and data were analysed using the TEG Analytical Software, V.4.1.54.
A list of the primers used can be found in Supplementary Table 2. Gene expression data were analysed using the ddCt method using GAPDH as housekeeping gene.
Reads were aligned to the A. thaliana Columbia (TAIR10) genome using CLC Genomics Workbench v7.0.3 and analysed using the DESeq package from the R/Bioconductor software75.
The data is analysed using the response surface method (using a mixture design of a constrained triangular surface) and ANOVA.
Differences between experts and non-expert ratings were analysed using the Mann-Whitney U test using a p value ≤ 0.05 to indicate significance.
Samples were analysed using the ABI 377 using Genescan and Genotyper programmes.
Data was analysed using the Rotorgene's comparative quantitation software using selected untreated samples as the calibrator.
Levels of transgressive overyielding [see 45 for details], using the appropriate maximum monoculture level of ecosystem functioning as the basis for comparison, were also calculated and analysed using the statistical framework used for non-transgressive overyielding.
Data from Agilent Feature Extraction software.txt were analysed using the Partek Genomic Suite Software (PGS) using a modification of the previously described protocols [25], [26].
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