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To analyse the list of 1341 proteins, we used a number of bioinformatic tools, databases and literature sources, to obtain information about predicted subcellular localizations, and functional domains.
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They are not allowed to intercept the content of the calls without a warrant signed by a secretary of state, but they can analyse the listing of numbers and the duration of calls – as you get on your phone bill – to search for gangs, drug dealers or terrorists.
We analysed the list of differentially expressed genes of SakOE compared to w for enrichment of Gene Ontology (GO) terms using DAVID, a program that weighs the enrichment of a specific GO term in a given data-set relative to the frequency of that term on the Drosophila 2.0 chip (Dennis et al., 2003; Huang et al., 2008).
These analyses expanded the list of potential readers for the H3K4me3 and H3K9me3 marks, including the spindle-associated protein Spindlin1.
PH reconstructed the putative secondary structures of rRNA group I introns in Synechococcus strains, carried out the phylogenetic analyses, compiled the list of group I introns with HEGs in bacteria, and drafted the manuscript.
We performed Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway and gene ontology (GO) analyses using the list of 4648 Class A BOPs differentially methylated between DS and DSS (Table 1).
In addition to the APOE ε4 haplotype (MIM 107741), we limited out analyses to the list of SNPs that showed a genome-wide association with AD in previous literature and were replicated in additional publications.
In an attempt to answer the question, I tried a different tack by analysing the lists of contributors to serious English-language print or online publications (including the London Review of Books, the New York Review of Books, major broadsheet newspapers, some widely read blogs and other sources), looking for British thinkers.
To avoid any bias that may result from building this interaction network from DISC1 interactors, we have further analysed the lists of interactors of DISC1 and HTT from the EBI IntAct database (www.ebi.ac.uk/intact/) and again found significant enrichment of DISC1 interactors in the list of HTT interactors (P = 0.007).
We further analysed the lists of genes that were induced by TNFα using specific gene ontologies.
Moreover, for additional analyses, the lists of 'highly conserved targets' were defined as mRNAs with a specific binding site conserved both in mammals (humans, mice, rats, dogs) and in chickens.
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