Shared by a subset of the templates (such as a specific loop conformation).
A specific loop in TmCel5A, Tmloop, is one of the most structurally divergent regions compared to CtCel5E and interacts with substrates, suggesting the importance for mannan recognition.
Furthermore, one can imagine that a clavisome is able to initiate the transcription of the adjacent (previous or subsequent) Alu-sequence, once it has opened up a specific loop for transcription (Fig. 6).
The epitope assignment to a specific loop not only provides important insight into the nature of the interaction between F1-40 and BoNT/A, but also is highly useful for the future development of F1-40 an an integral component of a test for BoNT/A contamination of food.
The different nature of loop indels and base indels suggests two different gap opening penalties β loop ≤ 0 and β base ≤ 0. Thus, in addition to the regular gap opening costs for base indels, we penalize the change of structure by loop indels with a specific loop gap opening cost.
While structural comparison of the LmDTDA2 and PfDTDA1 shows major differences in the length of a specific loop, 3-D structural modeling of LmDTDA1 homologue (LmjF.36.2730) based on the PfDTD template structure and a comparative structural analysis of LmDTDA1 with a perspective of inhibitor design is commendable.
The loop has a specific iteration t that computes the different values presented in Eq. (4) are done.
More precisely, the classical approach is generalized by inserting a new specific loop in the main adaptation loop in order to solve a transient fixed point problem for the mesh solution couple.
We have identified a conserved sequence in the repetitive insertion mobile element (RIME) of the sub-genus Trypanozoon and used it to design primers for a highly specific loop-mediated isothermal amplification (LAMP) test.
d The complete probe with USB wire Fig. 3 Left panel shows the simulator using a mobile phone for the display of a specific ultrasound loop video, Right panel shows a commercially available handheld point-of-care ultrasound device (VSCAN DUAL, courtesy General Electric).
