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a Optimal span obtained by using the Akaike's Information Criterion AICC) unless otherwise noted.
The relationships between genotypes were represented using a minimum spanning network (MSN).
The parameter ε was set to zero (default) to obtain a sparse spanning network.
The three Y-chromosomal microsatellites were only used to reconstruct a minimum spanning network.
A minimum spanning network was constructed manually with all equally parsimonious connections being represented.
Relationships between haplotypes were also visualized as a minimum spanning network, using the Median-Joining (MJ) network algorithm implemented in the program network 4.1.1.0 [ 25].
The method, described in Algorithm 2, begins by constructing a minimum spanning network, corresponding to the union of edges in all minimum spanning trees.
As such, eBURST and a maximum parsimony minimum spanning network analyses were carried out.
Permuted datasets under this null hypothesis may have had a larger optimal span size, particularly for the ID analyses, which had a relatively small span size for the observed data (optimal span = 0.30).
A large optimal span size indicates less spatial variability in prevalence compared to a small optimal span.
Last year another group at the company used simulated natural selection to "evolve" an optimal network architecture.
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