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E. coli was isolated from 66 samples, yielding an isolation rate of 73.3% regardless of bird species.
M. abscessus was isolated from three patients with an isolation rate of 2.3%, and two of these patients (1.5%) met the ATS microbiologic criteria (positive culture results from at least two separate sputum samples) [ 9].
With regards to Gram-negative pathogens in ocular infections in Lagos, we found P. aeruginosa as the predominating strain with an isolation rate of 9.7%, whereas in a previous study in the same environment, Klebsiella pneumoniae was the most commonly isolated pathogen (12.9%) followed by P. aeruginosa (8.2%).
Interestingly, a single retail market in Hong Kong in 1997 had an isolation rate of 36.6% for the H9N2 subtype, and the HP H5N1 subtype was isolated at the same market [8].
It also demonstrates that it was possible to preserve isolates (capable of undergoing more than two passages in tissue culture) based on using the swab supernatant, giving an isolation rate of 43%.
We achieved an isolation rate of 47%.
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Kuroki et al. [ 31] isolated C. jejuni from 30% of GBS patients, whereas Rees et al. had a isolation rate of 8% [ 32].
The cyclical dominance of H1N1 virus isolation from shorebirds and gulls appears to be more irregular than that from migratory ducks, with an overall isolation rate of 0.15% (16 isolates per 11 030 samples).
Between 1996 and 2006, stx−/eae+ E. coli strains were isolated from stools of 43 (5.5%) of 787 individual, epidemiologically unrelated HUS patients; additional 440 (55.9%) patients excreted EHEC (Table 1), resulting in an overall isolation rate of 61.4% (483 of 787).
Despite up to 80% of healthy persons carry H. influenzae [4], with multiple strains in 50% positive samples [5] and although there is an increasing isolation rate of BLPACR [11], the use of strains with different resistance phenotypes may be a limitation of the study.
Based on a previous study in Sweden by Engvall et al. [ 4] an overall isolation rate of Campylobacter spp. of around 50% was expected.
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