Sentence examples for an initial alignment with from inspiring English sources

We performed an initial alignment with a minimum match percentage of 93%.

An initial alignment with the template was performed using ClustalW for amino acid residues 84−512 from ANTR1 and revealed 18% identity.

After sequencing, an initial alignment was performed with the multiple sequence alignment program MUSCLE [ 67] to detect singletons, which are polymorphisms that are found only once among the sequenced materials.

Two datasets consisting of 50 alignments were generated, one with an initial alignment length of 1,000 positions, one with 200 positions.

It starts with an initial alignment which provides an estimate of the amino acid composition at each position of the respective conserved stretch that is found.

Here, we begin with an initial alignment A 0) produced by ProbCons (Do et al., 2005) under the model P(A|Q).

To infer these parameters from the data, we use a simple iterative approach [ 28]: Starting with an initial alignment, parameters are estimated so that the likelihood of the alignment is maximised.

Mams uses MUSCLE (Edgar 2004) for an initial alignment, followed by a refinement step with HMMalign (Eddy S; http://hmmer.janelia.org) and the elimination of all sequence positions with posterior probabilities lower than 1.

For multiple analysis, MAFFT [ 36] was used under the FFT-NS-i option, i.e. with fast construction of an initial alignment followed by iterative refinement until convergence.

E.g., perform an initial alignment in a rodent using an anatomical scan, and then perform a second alignment step on distorted EPI data (with matching slices) by starting with the first parameter set but eliminating the slice position (z) and scaling (size-z) from the parameter set, because the slice-selection step is the same for anatomical and EPI data.

Calculation of an initial alignment for the two coordinate systems   3.